PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0093s0037.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 229aa    MW: 24561.6 Da    PI: 10.2523
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0093s0037.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.25.6e-203080155
                  AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ++++GVr ++ +gr++AeIrd ++    ++r++lg+f++a+ Aa+a++aa+++l+g
  Kalax.0093s0037.1.p 30 PKFRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSADAAARAYDAAARSLRG 80
                         79********.**********883....5*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.0E-133080IPR001471AP2/ERF domain
CDDcd000183.40E-183087No hitNo description
Gene3DG3DSA:3.30.730.105.4E-313188IPR001471AP2/ERF domain
SMARTSM003801.1E-343194IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-213189IPR016177DNA-binding domain
PROSITE profilePS5103223.1173188IPR001471AP2/ERF domain
PRINTSPR003671.2E-93243IPR001471AP2/ERF domain
PRINTSPR003671.2E-95470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MGKVRGGATA AAARGNQVKD APLAIGSAEP KFRGVRKRPW GRFAAEIRDP WKKTRVWLGT  60
FDSADAAARA YDAAARSLRG PKARTNFPTP PATPPASPHH LPNDLIAAQR FYNADAYREQ  120
QRVDRANPPR PATSSMSTTV ESFSGPRRQQ TIHPAVASRR FPKSPPVTAD DCHSDCDSSS  180
NVVDGAVEVG VTTSFKKPLA FDLNFPPLDD LGFSGGESEM RCSTALCL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-173288663ATERF1
3gcc_A1e-173288663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001295747.11e-55ethylene-responsive transcription factor 3-like
SwissprotQ9LDE42e-42ERF83_ARATH; Ethylene-responsive transcription factor 7
TrEMBLA0A0V0HV083e-64A0A0V0HV08_SOLCH; Putative ethylene-responsive transcription factor 3-like
STRINGPGSC0003DMT4000373592e-54(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.11e-32ethylene responsive element binding factor 3